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Molecular Dynamics Simulation with GROMACS: A Beginner's Tutorial ΡΠΊΠ°Ρ‡Π°Ρ‚ΡŒ Π² Ρ…ΠΎΡ€ΠΎΡˆΠ΅ΠΌ качСствС

Molecular Dynamics Simulation with GROMACS: A Beginner's Tutorial 8 мСсяцСв Π½Π°Π·Π°Π΄

ΡΠΊΠ°Ρ‡Π°Ρ‚ΡŒ Π²ΠΈΠ΄Π΅ΠΎ

ΡΠΊΠ°Ρ‡Π°Ρ‚ΡŒ mp3

ΡΠΊΠ°Ρ‡Π°Ρ‚ΡŒ mp4

ΠΏΠΎΠ΄Π΅Π»ΠΈΡ‚ΡŒΡΡ

Ρ‚Π΅Π»Π΅Ρ„ΠΎΠ½ с ΠΊΠ°ΠΌΠ΅Ρ€ΠΎΠΉ

Ρ‚Π΅Π»Π΅Ρ„ΠΎΠ½ с Π²ΠΈΠ΄Π΅ΠΎ

бСсплатно

Π·Π°Π³Ρ€ΡƒΠ·ΠΈΡ‚ΡŒ,

НС удаСтся Π·Π°Π³Ρ€ΡƒΠ·ΠΈΡ‚ΡŒ Youtube-ΠΏΠ»Π΅Π΅Ρ€. ΠŸΡ€ΠΎΠ²Π΅Ρ€ΡŒΡ‚Π΅ Π±Π»ΠΎΠΊΠΈΡ€ΠΎΠ²ΠΊΡƒ Youtube Π² вашСй сСти.
ΠŸΠΎΠ²Ρ‚ΠΎΡ€ΡΠ΅ΠΌ ΠΏΠΎΠΏΡ‹Ρ‚ΠΊΡƒ...
Molecular Dynamics Simulation with GROMACS: A Beginner's Tutorial
  • ΠŸΠΎΠ΄Π΅Π»ΠΈΡ‚ΡŒΡΡ Π’Πš
  • ΠŸΠΎΠ΄Π΅Π»ΠΈΡ‚ΡŒΡΡ Π² ОК
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Π‘ΠΊΠ°Ρ‡Π°Ρ‚ΡŒ Π²ΠΈΠ΄Π΅ΠΎ с ΡŽΡ‚ΡƒΠ± ΠΏΠΎ ссылкС ΠΈΠ»ΠΈ ΡΠΌΠΎΡ‚Ρ€Π΅Ρ‚ΡŒ Π±Π΅Π· Π±Π»ΠΎΠΊΠΈΡ€ΠΎΠ²ΠΎΠΊ Π½Π° сайтС: Molecular Dynamics Simulation with GROMACS: A Beginner's Tutorial Π² качСствС 4k

Π£ нас Π²Ρ‹ ΠΌΠΎΠΆΠ΅Ρ‚Π΅ ΠΏΠΎΡΠΌΠΎΡ‚Ρ€Π΅Ρ‚ΡŒ бСсплатно Molecular Dynamics Simulation with GROMACS: A Beginner's Tutorial ΠΈΠ»ΠΈ ΡΠΊΠ°Ρ‡Π°Ρ‚ΡŒ Π² максимальном доступном качСствС, Π²ΠΈΠ΄Π΅ΠΎ ΠΊΠΎΡ‚ΠΎΡ€ΠΎΠ΅ Π±Ρ‹Π»ΠΎ Π·Π°Π³Ρ€ΡƒΠΆΠ΅Π½ΠΎ Π½Π° ΡŽΡ‚ΡƒΠ±. Для Π·Π°Π³Ρ€ΡƒΠ·ΠΊΠΈ Π²Ρ‹Π±Π΅Ρ€ΠΈΡ‚Π΅ Π²Π°Ρ€ΠΈΠ°Π½Ρ‚ ΠΈΠ· Ρ„ΠΎΡ€ΠΌΡ‹ Π½ΠΈΠΆΠ΅:

  • Π˜Π½Ρ„ΠΎΡ€ΠΌΠ°Ρ†ΠΈΡ ΠΏΠΎ Π·Π°Π³Ρ€ΡƒΠ·ΠΊΠ΅:

Π‘ΠΊΠ°Ρ‡Π°Ρ‚ΡŒ mp3 с ΡŽΡ‚ΡƒΠ±Π° ΠΎΡ‚Π΄Π΅Π»ΡŒΠ½Ρ‹ΠΌ Ρ„Π°ΠΉΠ»ΠΎΠΌ. БСсплатный Ρ€ΠΈΠ½Π³Ρ‚ΠΎΠ½ Molecular Dynamics Simulation with GROMACS: A Beginner's Tutorial Π² Ρ„ΠΎΡ€ΠΌΠ°Ρ‚Π΅ MP3:


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Molecular Dynamics Simulation with GROMACS: A Beginner's Tutorial

This step-by-step tutorial is designed for beginners who want to learn how to set up and run molecular dynamics (MD) simulations using GROMACS. This video will not just show the process; I will explain each step and the reasons behind it. Furthermore, I will discuss GROMACS's input and output files. This video is part of the online GROMACS workshop hosted by InsilicoSci. Participate in the workshop: https://bit.ly/41TytXj To get the simulation parameter files click on this link: https://bit.ly/3LVCTrc Outlines 00:14 Introduction 00:56 How to find protein structures 03:24 Introducing the PDB file format 05:07 Visualise a protein structure using VMD 05:46 Remove water molecules from the structure 07:43 Explaining the GROMACS input flowchart 11:37 Fixing missing atoms in PDB files 13:22 Create a topology file for a protein structure 15:24 Explaining the GROMACS coordinate file (gro) 16:13 Explaining the GROMACS topology file 19:37 Remove GROMACS backup files 20:06 Setting up a PBC box 23:11 Adding solvent molecules to the simulation box 25:00 Adding ions 28:43 Minimising system 34:10 Equilibrating system in the NVT ensemble 36:01 Explaining position restraints in GROMACS 38:28 Explaining the GROMACS MDP file 45:01 How to check if the system reached equilibrium 47:09 Equilibrating system in the NPT ensemble 51:59 Performing the product simulation 52:49 Explaining GROMACS compressed and uncompressed trajectory files 55:05 Explaining GROMACS output files 56:14 How to restart and extend a simulation 01:00:35 Visualise and check trajectory files using VMD 01:03:19 Performing basic analysis of simulation results 01:04:44 RMSD analysis 01:07:12 Radius of gyration analysis insilicosci.com

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