Brainhack TBSS analysis with Neurodesk and Jupyter Notebooks скачать в хорошем качестве

Brainhack TBSS analysis with Neurodesk and Jupyter Notebooks

This is a video overview of what I will be presenting at the Organization for Human Brain Mapping conference during Brainhack. I will be helping showcase Neurodesk, and in particular how its Jupyter notebooks can be used as a wrapper to run a diffusion-weighted imaging analysis using FSL's TBSS commands. Note that this assumes you have already downloaded and installed Neurodesk; a detailed walkthrough can be found here: https://andysbrainbook.readthedocs.io... Link to the TBSS module of Andy's Brain Book: https://andysbrainbook.readthedocs.io... Table of Contents ============== 0:00 Overview 1:19 Downloading the Jupyter notebook 2:27 Analyzing the data within the Jupyter notebook 4:45 Downloading the data using datalad 10:27 Unwarping the data using topup 13:33 Viewing the unwarped data 17:04 Fitting the tensors and running TBSS commands 20:45 Summary