AIRRC7 - Software & Tools Lightning Demos скачать в хорошем качестве

AIRRC7 - Software & Tools Lightning Demos

Software & Tools - Lightning Demos Moderator: Justin Barton Principal Machine Learning Scientist, Alchemab Therapeutics AIRR Community Meeting VII – Learnings and Perspectives June 3-6, 2024 University of Porto, Porto, Portugal https://www.antibodysociety.org/the-a... 01:05 ImmuneWatch DETECT Sander Wuyts, ImmuneWatch, CEO ImmuneWatch DETECT is a reliable and fast TCR-epitope interaction annotation tool. https://www.immunewatch.com 08:25 LZGraphs Thomas Konstantinovsky, Bar Ilan University, PhD Student The LZGraph is a graph-based model for analyzing adaptive immune receptor repertoires, where the nodes represent unique sub-patterns and edges connect sequential sub-patterns. https://mutejester.github.io/LZGraphs/ 17:27 AbSolution Rodrigo García Valiente, Amsterdam UMC, PhD Student AbSolution is an R Shiny tool for interactive analysis and exploration of Ig-Fab-sequence features. 25:45 AnalyzAIRR Vanessa Mhanna, Immunology-Immunopathology-Immunotherapy laboratory i3 Sorbonne Université, Post-Doc AnalyzAIRR is an R package developed to analyze bulk Ig/TCR repertoire datasets. It allows a general data exploration to evaluate the homogeneity within defined groups, identify outliers and filter them out. https://github.com/vanessajmh/AnalyzAIRR 35:02 ACE Configurator for ELIspot Dhuvi Karthikeyan, Personalized Immunotherapy Research Lab, Graduate Research Assistant (ML X Immunology) Jin Seok (Andy) Lee, Personalized Immunotherapy Research Lab (PIRL), Graduate Research Assistant ACE Configurator for ELISpot (ACE) is a standalone GUI AND CLI program that facilitates sequence-aware ELISpot assay design and deconvolution of immunogenic peptides end-to-end. https://doi.org/10.1093/bib/bbad495 45:05 reportAIRR Ayelet Peres, Bar Ilan University reportAIRR is an interactive app for exploring adaptive immune receptor repertoire quality, facilitates easy comparison of features across repertoires through multi-sample reporting. https://peresay-domain2.shinyapps.io/... 54:21 ALIGaToR Chaim Schramm, NIH/NIAID/VRC, Staff Scientist ALIGaToR ("Annotator of Loci for ImmunoGlobulins and T Receptors") is a tool for the automated de novo annotation of V, D, J, and C genes in (unrearranged) genomic sequences. https://github.com/scharch/aligator 01:01:10 Immcantation Steven Kleinstein, Yale University, Professor The Immcantation framework provides a start-to-finish AIRR-compliant analytical ecosystem for high-throughput AIRR-seq datasets. https://immcantation.org 01:11:18 MAbFactory Anne Poupon, MAbSilico, CTO MAbFactory offers easy and fast access to a comprehensive range of antibodies-related data and tools. https://azuremarketplace.microsoft.co... 01:20:28 RepCred Ayelet Peres, Bar Ilan University RepCred is an easy-to-use R package that takes an AIRR-formatted rearrangements TSV file as input and produces a graphical report that can be used to quickly appraise repertoire credibility and identify potential problems. https://github.com/airr-community/rep...