CIF Tutorials | QuPath : Counting and classifying cells in multiple brain regions скачать в хорошем качестве

CIF Tutorials | QuPath : Counting and classifying cells in multiple brain regions

CIF Tutorial : This video is an example of how to create a project from A to Z in QuPath. --- [Summary] In this video I show how to setup QuPath, how to draw regions using various tools, how to detect cells with both cell detetction and StarDist, and train classifiers and create a composite classifier to find positive and double positive cells. --- [Chapters] 0:00 Introduction 0:44 Creating a project and importing images 2:09 Drawing regions 11:16 Detecting cells with the default algorithm 13:29 Getting StarDist and the model 17:15 Detecting cells with Stardist 23:42 Create training images 25:29 Training the classifiers 35:51 Creating a composite classifier and subclasses 39:28 Combining detection and classification 42:35 End [Features used] StarDist Extension Scripting Training classifiers Training images Composite classifiers --- [Images] Image from : courtesy of Prof. Nicole Deglon, CHUV, Lausanne --- [Author] Yannick Krempp, bioimage analyst at the CIF platform, Lausanne, Switzerland https://cif.unil.ch​​   / yannick-k​rempp