Microbial Community Modeling Workshop скачать в хорошем качестве

Microbial Community Modeling Workshop

This session demonstrates new workflows envisioned for analyzing microbial communities in KBase using tools under development as of April 2024. Demonstrations include how to build community metabolic models using new tools for performing community-level flux balance analysis with examples of successful analyses of species interactions from multiple microbiome systems. We show the CommScores tool being co-developed with the PMI SFA for predicting likely pairwise interactions among all the genomes in an input set. Lastly, a demonstration of new apps that enable seamless prediction of ecophysiological traits of bacteria and archaea from KBase genomes (microTrait) and their representation in a coherent dynamic energy budget-based trait-based modeling framework (DEBmicroTrait). Presnted by Jose Faria (Argonne National Laboratory), Chris Henry (Argonne National Laboratory), Priya Ranjan (Oak Ridge National Laboratory), Gianna Marschmann (Lawrence Berkeley National Laboratory), Ulas Karaoz and (Lawrence Berkeley National Laboratory) as part of the 2024 US Department of Energy Genome Science Program (GSP) Principal Investigator Meetings.