Using the rentrez R package to search PubMed to plot the number of papers by year (CC212) скачать в хорошем качестве

Using the rentrez R package to search PubMed to plot the number of papers by year (CC212)

Pat will show you how to search PubMed from R using the rentrez package to understand how the number of papers in a field has grown over time. He'll share two ways. First, he'll get the data directly from PubMed and import them into R. Second, he'll automate the process using the rentrez R package, which allows you to search PubMed and any NCBI database from within R. Along the way, he'll show how to analyze the data using R functions from dplyr and ggplot2 within RStudio. You can find my blog post for this episode at https://www.riffomonas.org/code_club/.... #rentrez #ggplot2 #R #Rstudio #Rstats Want more practice on the concepts covered in Code Club? You can sign up for my weekly newsletter at https://shop.riffomonas.org/youtube to get practice problems, tips, and insights. If you're interested in taking an upcoming 3 day R workshop be sure to check out our schedule at https://riffomonas.org/workshops/ You can also find complete tutorials for learning R with the tidyverse using... Microbial ecology data: https://www.riffomonas.org/minimalR/ General data: https://www.riffomonas.org/generalR/ 0:00 Introduction 0:44 Using PubMed directly to get publication counts 4:51 Using rentrez to search PubMed 14:21 Plotting annual counts for microbiome papers 18:34 Adding annual counts for cancer papers 20:29 Comparing counts to overall publication trends