Day 4 - R Basics | 16.09.22 | Genomics and NGS Workshop by Nextgenhelper скачать в хорошем качестве

Day 4 - R Basics | 16.09.22 | Genomics and NGS Workshop by Nextgenhelper

International Workshop on "Bioinformatics, Genomics, Text Mining and NGS Data Analytics" (Sep 12 - 30, 2022) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- FULL SCHEDULE Day 1: Sep 12: Basic Linux commands Start working on Linux System Basic commands to play with data​​ Day 2: Sep 13: Basics of Python.​ Introduction to Python and code editors Basic programming concepts Day 3: Sep 15: Data handling in Python, and Biopython Bioinformatics with Python Biopython Modules Day 4: Sep 16: Learn 'R' programming for beginners ​ Basics of 'R' and 'R studio'. Installation of 'R' and 'R Studio Day 5: Sep 17: Data handling in R with R-Studio Basic data/file handling in R. Day 6: Sep 19: Biomedical text mining - I Day 7: Sep 20: Biomedical text mining - II Day 8: Sep 21: Biomedical text mining - III Day 9: Sep 22: Biomedical text mining - IV Day 10: Sep 23: Quality Control of NGS datasets Basics of NGS datasets, generation and Quality Score. Data handling and Filtering of NGS datasets, trimming etc. Training of tools to filter the NGS datasets. Day 11: Sep 24: Gene Expression analysis with RNA-Seq data Basics of RNA-Seq, Data processing of RNA-seq Gene expression identification, and further analysis Day 12: Sep 26: Gene Whole genome assembly with NGS datasets Basics of Whole genome assembly Demonstration of whole genome assembly with short reads Quality assignment of whole genome assembly Day 13: Sep: Whole Genome Annotations, and Gene annotations Gene prediction Whole genome annotation with PROKKA pipeline for prokaryotic genomes Assigning the functions to the predicted genes Day 14: Sep 29: NGS Data analysis with Galaxy tool - I Basics of Galaxy tool NGS data import/export, and analysis in GALAXY Day 15: Sep 30: NGS Data analysis with Galaxy tool - II Advanced learning of data analysis in Galaxy tool ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Provided by: nextgenhelper.com