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In this tutorial, we demonstrate how to batch process over 30 Arabidopsis root systems into detailed 3D models using Agisoft Metashape and imagery captured with the Macropod PRO 3D system by Macroscopic Solutions. These samples were grown in microgravity aboard the Polaris Dawn mission and preserved inside plastic cubic cuvettes for imaging and analysis back on Earth. 🌱🛰️ Purchase this software here: https://macroscopicsolutions.com/prod... The batch processing pipeline shown in this video is designed to streamline large-scale 3D model generation using Agisoft Metashape’s built-in batch tools, allowing for high-throughput reconstruction of biological specimens from complex missions. 🚀 Mission Context: Polaris Dawn is the first mission in the Polaris Program, led by Jared Isaacman in collaboration with SpaceX. Scheduled for mid-2025, Polaris Dawn aims to conduct the first commercial spacewalk, reach record orbital altitudes, and carry out extensive scientific research in low Earth orbit. This Arabidopsis root experiment is a joint initiative between the U.S. Space Force, the United States Air Force Academy (USAFA), and SpaceX, designed to explore plant development in space—a key component of future life-support systems for long-duration missions. 00:00 Introduction 03:31 Data & Computer Overview 07:27 Setting Up Batches & Importing Data 09:00 Record Bulk Edits 11:12 Spectral Manipulation 16:44 Applying Bulk Edits 19:05 Camera Calibration in Agisoft Metashape (Units in Pixels) 20:00 Batch Align Images 24:35 Batch Point Cloud Generation 30:41 Point Cloud Cleanup 36:56 Batch Building a Model