Alternatives to ordination with R: Displaying one day time lag in beta diversity (CC205) скачать в хорошем качестве

Alternatives to ordination with R: Displaying one day time lag in beta diversity (CC205)

An ordination has a limited set of uses. But are there alternatives to ordination for displaying beta-diversity data with the tidyverse in R? In this episode, Pat shares one method for showing temporal stability in microbial communities where he looks at the day to day difference in beta diversity. He'll demonstrate this approach by using vegan, dplyr, and ggplot2. You can find the blog post for this episode at https://www.riffomonas.org/code_club/.... The data were generated in our Kozich et al. 2013 paper (http://doi.org/10.1128/AEM.01043-13) using samples from the Schloss et al. 2012 paper (http://doi.org/10.4161/gmic.21008). #microbiome #tidyverse #R #Rstudio #Rstats Want more practice on the concepts covered in Code Club? You can sign up for my weekly newsletter at https://shop.riffomonas.org/youtube to get practice problems, tips, and insights. If you're interested in taking an upcoming 3 day R workshop be sure to check out our schedule at https://riffomonas.org/workshops/ You can also find complete tutorials for learning R with the tidyverse using... Microbial ecology data: https://www.riffomonas.org/minimalR/ General data: https://www.riffomonas.org/generalR/ 0:00 An alternative to ordinations for visualizing community stability 3:40 Getting a distance matrix into tidy format 4:46 Extract information from sample names 7:29 Creating initial time lag plot 12:12 Improving appearance of plot