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Here we explain how to generate a presentation/publication-quality nested categorical boxplots in R/R-studio using ggplot2. The codes for the steps explained in the video are as follows. Copy and paste them into R, run them one-by-one and try to understand what each argument is doing. #datascience #datavisualization #visualization #ggplot2 #tidyverse #nestedboxplot #categoricalboxplot #boxplot #nested #categorical #Salaries #Salariesdataset #rstudio #rcoding library(carData) data("Salaries", package = "carData") library(writexl) write_xlsx(Salaries[ , c(1, 2, 6)], path = "Salaries.xlsx") library(readxl) data = read_excel("Salaries.xlsx") head(data) str(data) library(ggplot2) p = ggplot(data = data, aes(x=rank, y=salary / 1e3, fill=discipline)) + geom_boxplot() ggsave(p, filename = "ggplot_nestbox1.pdf", height = 8, width = 8) ranks = c("AsstProf", "AssocProf", "Prof") data$rank = factor(data$rank, levels = ranks) data$discipline = factor(data$discipline, levels = c("A", "B")) data$salary = data$salary / 1e3 str(data) p = ggplot(data = data, aes(x=rank, y=salary, fill=discipline)) + geom_boxplot() ggsave(p, filename = "ggplot_nestbox2.pdf", height = 8, width = 8) levels(data$rank) = c("Assistant Prof.", "Associate Prof.", "Full Prof.") levels(data$discipline) = c("Theoretical", "Applied") p = ggplot(data = data, aes(x=rank, y=salary, fill=discipline)) + geom_boxplot() ggsave(p, filename = "ggplot_nestbox3.pdf", height = 8, width = 8) p = ggplot(data = data, aes(x=rank, y=salary, fill=discipline)) + stat_boxplot(geom = "errorbar") + geom_boxplot() ggsave(p, filename = "ggplot_nestbox4.pdf", height = 8, width = 8) p = ggplot(data = data, aes(x=rank, y=salary, fill=discipline)) + stat_boxplot(geom = "errorbar") + geom_boxplot() + ggtitle("Salary comparison") + xlab(NULL) + ylab("Nine-month salary (in thousands USD)") ggsave(p, filename = "ggplot_nestbox5.pdf", height = 8, width = 8) p0 = ggplot(data = data, aes(x=rank, y=salary, fill=discipline)) + stat_boxplot(geom = "errorbar") + geom_boxplot() + ggtitle("Salary comparison") + xlab(NULL) + ylab("Nine-month salary (in thousands USD)") + theme(axis.text=element_text(size=18), axis.title=element_text(size=18), plot.title = element_text(size=20, hjust = 0.5)) ggsave(p0, filename = "ggplot_nestbox6.pdf", height = 8, width = 8) p = p0 + theme(legend.text=element_text(size=18), legend.title = element_text(size=18, hjust = 0.5), legend.key.height = unit(2,"cm"), legend.key.width = unit(2,"cm"), legend.position = c(0.2, 0.8)) + guides(fill=guide_legend(title="Discipline")) ggsave(p, filename = "ggplot_nestbox7.pdf", height = 8, width = 8) cols = rep(c("#E69F00", "#56B4E9"), length(levels(data$rank))) p = p0 + theme(legend.text=element_text(size=18), legend.title = element_text(size=18, hjust = 0.5), legend.key.height = unit(2,"cm"), legend.key.width = unit(2,"cm"), legend.position = c(0.2, 0.8)) + guides(fill=guide_legend(title="Discipline")) + scale_fill_manual(values=cols) ggsave(p, filename = "ggplot_nestbox8.pdf", height = 8, width = 8)